Examples¶
The following examples are derived directly from IPython notebooks in the hgvs source code examples directory.
- Creating a SequenceVariant from scratch
- Manuscript Example
- Parse an HGVS string into a Python structure
- Open the UTA public data source for mapping and validation
- Project transcript variant NM_182763.2:c.688+403C>T to GRCh37 primary assembly using splign alignments
- Project genomic variant to a new transcript
- Infer protein changes for these transcript variants
- Format the results by “stringification”
- Validate a variant
- Automated liftover of NM_001261456.1:c.1762A>G (rs509749) to NM_001261457.1 via GRCh37
- Manual liftover of NM_001261456.1:c.1762A>G (rs509749) to NM_001261457.1 via GRCh37
- Using hgvs